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has no fragment
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If the local prerequisite git repository having the .git extension doesn't
exist but the one without the extension does, then strip the extension from
the location.
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Note that now rep-info in the manifest mode does not dump any of the
repository type-specific information.
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The rationale: we now need the 'add' command for certificates (i.e., add a
trusted certificate to the configuration). In the old naming scheme we would
have to call it cfg-add which is already taken. In the new scheme we will call
it crt-add.
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Also, add support for commands to return program status.
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